HL_4V8Z_050

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

4V8Z|1|B5|C|648

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Z_050 not in the Motif Atlas

Homologous match to HL_5TBW_014

Geometric discrepancy: 0.0616

The information below is about HL_5TBW_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

4V8Z|1|B5|U|640
4V8Z|1|B5|C|641
4V8Z|1|B5|U|642
4V8Z|1|B5|U|643
4V8Z|1|B5|G|644
4V8Z|1|B5|A|645
4V8Z|1|B5|A|646
4V8Z|1|B5|A|647
4V8Z|1|B5|C|648
4V8Z|1|B5|A|649

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BB

60S RIBOSOMAL PROTEIN L3

Chain Ba

60S RIBOSOMAL PROTEIN L28

Chain Be

60S RIBOSOMAL PROTEIN L32