HL_4V8Z_057

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

4V8Z|1|B5|A|913

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Z_057 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.0656

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V8Z|1|B5|G|910
4V8Z|1|B5|C|911
4V8Z|1|B5|G|912
4V8Z|1|B5|A|913
4V8Z|1|B5|A|914
4V8Z|1|B5|A|915
4V8Z|1|B5|G|916
4V8Z|1|B5|A|917
4V8Z|1|B5|C|918

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BA

60S RIBOSOMAL PROTEIN L2-B

Chain BN

60S RIBOSOMAL PROTEIN L15-A

Chain Bj

60S RIBOSOMAL PROTEIN L37-A