HL_4V8Z_058

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

4V8Z|1|B5|C|959, 4V8Z|1|B5|A|962

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Z_058 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.2019

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V8Z|1|B5|C|958
4V8Z|1|B5|C|959
4V8Z|1|B5|U|960
4V8Z|1|B5|C|961
4V8Z|1|B5|A|962
4V8Z|1|B5|G|963

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain Ba

60S RIBOSOMAL PROTEIN L28

Chain Bb

60S RIBOSOMAL PROTEIN L29

Chain Bo

60S RIBOSOMAL PROTEIN L42-A

Chain CW

Transfer RNA; tRNA