HL_4V8Z_085

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

4V8Z|1|B5|A|2256

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Z_085 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.0683

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V8Z|1|B5|G|2253
4V8Z|1|B5|U|2254
4V8Z|1|B5|A|2255
4V8Z|1|B5|A|2256
4V8Z|1|B5|C|2257
4V8Z|1|B5|U|2258
4V8Z|1|B5|A|2259
4V8Z|1|B5|U|2260
4V8Z|1|B5|G|2261
4V8Z|1|B5|A|2262
4V8Z|1|B5|C|2263

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain A4

40S RIBOSOMAL PROTEIN S30-A

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain CX

5'-R(*AP*UP*GP)-3'