HL_4V8Z_086

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

4V8Z|1|B5|U|2298

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Z_086 not in the Motif Atlas

Homologous match to HL_5TBW_050

Geometric discrepancy: 0.0682

The information below is about HL_5TBW_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

4V8Z|1|B5|U|2292
4V8Z|1|B5|C|2293
4V8Z|1|B5|U|2294
4V8Z|1|B5|A|2295
4V8Z|1|B5|A|2296
4V8Z|1|B5|U|2297
4V8Z|1|B5|U|2298
4V8Z|1|B5|A|2299
4V8Z|1|B5|G|2300

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain BV

60S RIBOSOMAL PROTEIN L23-A