HL_4V8Z_087

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

4V8Z|1|B5|A|2372, 4V8Z|1|B5|A|2373, 4V8Z|1|B5|C|2374

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Z_087 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.0528

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

4V8Z|1|B5|G|2369
4V8Z|1|B5|G|2370
4V8Z|1|B5|G|2371
4V8Z|1|B5|A|2372
4V8Z|1|B5|A|2373
4V8Z|1|B5|C|2374
4V8Z|1|B5|G|2375
4V8Z|1|B5|G|2376
4V8Z|1|B5|G|2377
4V8Z|1|B5|C|2378

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BB

60S RIBOSOMAL PROTEIN L3

Chain Be

60S RIBOSOMAL PROTEIN L32