HL_4V8Z_092
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- UUAAACGAUAACG
- Length
- 13 nucleotides
- Bulged bases
- 4V8Z|1|B5|A|2637, 4V8Z|1|B5|C|2644
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8Z_092 not in the Motif Atlas
- Homologous match to HL_5TBW_055
- Geometric discrepancy: 0.0475
- The information below is about HL_5TBW_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
4V8Z|1|B5|U|2633
4V8Z|1|B5|U|2634
4V8Z|1|B5|A|2635
4V8Z|1|B5|A|2636
4V8Z|1|B5|A|2637
4V8Z|1|B5|C|2638
4V8Z|1|B5|G|2639
4V8Z|1|B5|A|2640
4V8Z|1|B5|U|2641
4V8Z|1|B5|A|2642
4V8Z|1|B5|A|2643
4V8Z|1|B5|C|2644
4V8Z|1|B5|G|2645
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain BI
- 60S RIBOSOMAL PROTEIN L10
- Chain BT
- 60S RIBOSOMAL PROTEIN L21-A
- Chain Bb
- 60S RIBOSOMAL PROTEIN L29
- Chain CW
- Transfer RNA; tRNA
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