HL_4V8Z_098

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Z_098 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.101

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V8Z|1|B5|C|2840
4V8Z|1|B5|G|2841
4V8Z|1|B5|U|2842
4V8Z|1|B5|U|2843
4V8Z|1|B5|C|2844
4V8Z|1|B5|A|2845
4V8Z|1|B5|U|2846
4V8Z|1|B5|A|2847
4V8Z|1|B5|G|2848

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BI

60S RIBOSOMAL PROTEIN L10

Chain Bm

UBIQUITIN-60S RIBOSOMAL PROTEIN L40

Chain CV

EUKARYOTIC TRANSLATION INITIATION FACTOR 5B, PROBABLE TRANSLATION INITIATION FACTOR IF-2