HL_4V8Z_106

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Z_106 not in the Motif Atlas

Homologous match to HL_5TBW_069

Geometric discrepancy: 0.2025

The information below is about HL_5TBW_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4V8Z|1|B5|C|3240
4V8Z|1|B5|G|3241
4V8Z|1|B5|G|3242
4V8Z|1|B5|A|3243
4V8Z|1|B5|A|3244
4V8Z|1|B5|A|3245
4V8Z|1|B5|G|3246
4V8Z|1|B5|G|3247

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BB

60S RIBOSOMAL PROTEIN L3

Chain BO

60S RIBOSOMAL PROTEIN L16-A