HL_4V8Z_112

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CACAUUG

Length

7 nucleotides

Bulged bases

4V8Z|1|B8|A|111, 4V8Z|1|B8|U|113

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Z_112 not in the Motif Atlas

Homologous match to HL_5TBW_075

Geometric discrepancy: 0.0714

The information below is about HL_5TBW_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4V8Z|1|B8|C|108
4V8Z|1|B8|A|109
4V8Z|1|B8|C|110
4V8Z|1|B8|A|111
4V8Z|1|B8|U|112
4V8Z|1|B8|U|113
4V8Z|1|B8|G|114

Current chains

Chain B8

5.8S RIBOSOMAL RNA

Nearby chains

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain BX

60S RIBOSOMAL PROTEIN L25

Chain Bj

60S RIBOSOMAL PROTEIN L37-A

Chain Bl

60S RIBOSOMAL PROTEIN L39