HL_4V8Z_114

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

4V8Z|1|CW|G|18

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Z_114 not in the Motif Atlas

Homologous match to HL_5E81_205

Geometric discrepancy: 0.2819

The information below is about HL_5E81_205

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Z|1|CW|C|13
4V8Z|1|CW|A|14
4V8Z|1|CW|G|15
4V8Z|1|CW|U|16
4V8Z|1|CW|C|17
4V8Z|1|CW|G|18
4V8Z|1|CW|G|19
4V8Z|1|CW|U|20
4V8Z|1|CW|A|21
4V8Z|1|CW|G|22

Current chains

Chain CW

EUKARYOTIC RIBOSOMAL PI TRNA

Nearby chains

Chain A7

SUPPRESSOR PROTEIN STM1

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain Bo

60S RIBOSOMAL PROTEIN L42-A