HL_4V8Z_116

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Z_116 not in the Motif Atlas

Homologous match to HL_5UD5_003

Geometric discrepancy: 0.2768

The information below is about HL_5UD5_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

4V8Z|1|CW|G|53
4V8Z|1|CW|U|54
4V8Z|1|CW|U|55
4V8Z|1|CW|C|56
4V8Z|1|CW|G|57
4V8Z|1|CW|A|58
4V8Z|1|CW|U|59
4V8Z|1|CW|U|60
4V8Z|1|CW|C|61

Current chains

Chain CW

EUKARYOTIC RIBOSOMAL PI TRNA

Nearby chains

Chain A7

SUPPRESSOR PROTEIN STM1

Chain BJ

60S RIBOSOMAL PROTEIN L11-A

Chain Bo

60S RIBOSOMAL PROTEIN L42-A