HL_4V8Z_123

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Z_123 not in the Motif Atlas

Homologous match to HL_8P9A_150

Geometric discrepancy: 0.5886

The information below is about HL_8P9A_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68791.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V8Z|1|B5|C|1759
4V8Z|1|B5|A|1760
4V8Z|1|B5|C|1761
4V8Z|1|B5|C|1762
4V8Z|1|B5|U|1763
4V8Z|1|B5|U|1764
4V8Z|1|B5|U|1765
4V8Z|1|B5|G|1766

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BR

60S RIBOSOMAL PROTEIN L19-B

Chain BU

60S RIBOSOMAL PROTEIN L22-A

Chain BX

60S RIBOSOMAL PROTEIN L25