HL_4V92_006

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

4V92|1|A2|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V92_006 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.2064

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4V92|1|A2|G|243
4V92|1|A2|A|244
4V92|1|A2|U|245
4V92|1|A2|G|246
4V92|1|A2|A|247
4V92|1|A2|U|248
4V92|1|A2|U|249
4V92|1|A2|C|250

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BE

ES4

Chain BI

ES8