HL_4V92_008

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

4V92|1|A2|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V92_008 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.1727

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

4V92|1|A2|G|330
4V92|1|A2|A|331
4V92|1|A2|U|332
4V92|1|A2|A|333
4V92|1|A2|G|334
4V92|1|A2|U|335
4V92|1|A2|G|336
4V92|1|A2|G|337
4V92|1|A2|C|338

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BE

ES4

Chain BG

ES6

Chain BI

ES8