HL_4V92_020

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V92_020 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.3319

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V92|1|A2|A|829
4V92|1|A2|U|830
4V92|1|A2|U|831
4V92|1|A2|U|832
4V92|1|A2|U|833
4V92|1|A2|G|834
4V92|1|A2|U|835
4V92|1|A2|U|836
4V92|1|A2|G|837
4V92|1|A2|G|838
4V92|1|A2|U|839
4V92|1|A2|U|840
4V92|1|A2|U|841
4V92|1|A2|C|842
4V92|1|A2|U|843

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BE

ES4

Chain BG

ES6