HL_4V97_081

3D structure

PDB id

4V97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G299A.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

4V97|1|BA|A|1780, 4V97|1|BA|C|1781, 4V97|1|BA|C|1782, 4V97|1|BA|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V97_081 not in the Motif Atlas

Homologous match to HL_7RQB_045

Geometric discrepancy: 0.1036

The information below is about HL_7RQB_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.5

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

4V97|1|BA|U|1777
4V97|1|BA|U|1778
4V97|1|BA|U|1779
4V97|1|BA|A|1780
4V97|1|BA|C|1781
4V97|1|BA|C|1782
4V97|1|BA|A|1783
4V97|1|BA|A|1784
4V97|1|BA|A|1785
4V97|1|BA|A|1786
4V97|1|BA|A|1787

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B7

50S RIBOSOMAL PROTEIN L34

Chain BD

50S RIBOSOMAL PROTEIN L2