HL_4V97_209

3D structure

PDB id

4V97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G299A.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4V97|1|DA|A|2750, 4V97|1|DA|G|2751, 4V97|1|DA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V97_209 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1211

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

4V97|1|DA|C|2745
4V97|1|DA|U|2746
4V97|1|DA|G|2747
4V97|1|DA|A|2748
4V97|1|DA|A|2749
4V97|1|DA|A|2750
4V97|1|DA|G|2751
4V97|1|DA|C|2752
4V97|1|DA|A|2753
4V97|1|DA|U|2754
4V97|1|DA|C|2755
4V97|1|DA|U|2756
4V97|1|DA|A|2757
4V97|1|DA|A|2758
4V97|1|DA|G|2759

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D9

50S RIBOSOMAL PROTEIN L36

Chain DH

50S RIBOSOMAL PROTEIN L6

Chain DN

50S RIBOSOMAL PROTEIN L13