3D structure

PDB id
4V9A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of the 70S ribosome with tetracycline.
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GGUAAUGGC
Length
9 nucleotides
Bulged bases
4V9A|1|AA|G|266
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V9A_006 not in the Motif Atlas
Homologous match to HL_4LFB_006
Geometric discrepancy: 0.1408
The information below is about HL_4LFB_006
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_36455.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

4V9A|1|AA|G|259
4V9A|1|AA|G|260
4V9A|1|AA|U|261
4V9A|1|AA|A|262
4V9A|1|AA|A|263
4V9A|1|AA|U|264
4V9A|1|AA|G|265
4V9A|1|AA|G|266
4V9A|1|AA|C|267

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AT
30S RIBOSOMAL PROTEIN S17
Chain AW
30S RIBOSOMAL PROTEIN S20

Coloring options:


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