HL_4V9A_015

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9A_015 not in the Motif Atlas

Homologous match to HL_5J7L_015

Geometric discrepancy: 0.141

The information below is about HL_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V9A|1|AA|C|689
4V9A|1|AA|G|690
4V9A|1|AA|G|691
4V9A|1|AA|U|692
4V9A|1|AA|G|693
4V9A|1|AA|A|694
4V9A|1|AA|A|695
4V9A|1|AA|A|696
4V9A|1|AA|U|697
4V9A|1|AA|G|698

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AJ

30S RIBOSOMAL PROTEIN S7

Chain AN

30S RIBOSOMAL PROTEIN S11

Chain BA

Large subunit ribosomal RNA; LSU rRNA