HL_4V9A_070

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

4V9A|1|BA|G|1325, 4V9A|1|BA|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9A_070 not in the Motif Atlas

Homologous match to HL_7RQB_034

Geometric discrepancy: 0.086

The information below is about HL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

4V9A|1|BA|G|1324
4V9A|1|BA|G|1325
4V9A|1|BA|U|1326
4V9A|1|BA|C|1327
4V9A|1|BA|G|1328
4V9A|1|BA|U|1329
4V9A|1|BA|C|1330

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L17

Chain BS

50S ribosomal protein L22