HL_4V9A_198

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4V9A|1|DA|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9A_198 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.0945

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V9A|1|DA|C|2248
4V9A|1|DA|U|2249
4V9A|1|DA|G|2250
4V9A|1|DA|G|2251
4V9A|1|DA|G|2252
4V9A|1|DA|G|2253
4V9A|1|DA|C|2254
4V9A|1|DA|G|2255
4V9A|1|DA|G|2256

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CC

Transfer RNA; tRNA

Chain D3

50S ribosomal protein L27

Chain DP

50S ribosomal protein L16