HL_4V9A_203

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9A_203 not in the Motif Atlas

Homologous match to HL_5J7L_191

Geometric discrepancy: 0.171

The information below is about HL_5J7L_191

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V9A|1|DA|C|2374
4V9A|1|DA|G|2375
4V9A|1|DA|A|2376
4V9A|1|DA|A|2377
4V9A|1|DA|A|2378
4V9A|1|DA|G|2379

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D6

50S ribosomal protein L33

Chain DQ

50S ribosomal protein L18