HL_4V9B_038

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUUCAAAUCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9B_038 not in the Motif Atlas

Homologous match to HL_4V7M_040

Geometric discrepancy: 0.4629

The information below is about HL_4V7M_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

4V9B|1|AD|G|52
4V9B|1|AD|G|53
4V9B|1|AD|U|54
4V9B|1|AD|U|55
4V9B|1|AD|C|56
4V9B|1|AD|A|57
4V9B|1|AD|A|58
4V9B|1|AD|A|59
4V9B|1|AD|U|60
4V9B|1|AD|C|61
4V9B|1|AD|C|62

Current chains

Chain AD

TRNA-FMET

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA