HL_4V9C_050

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

4V9C|1|BA|U|546, 4V9C|1|BA|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9C_050 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1493

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V9C|1|BA|G|543
4V9C|1|BA|C|544
4V9C|1|BA|U|545
4V9C|1|BA|U|546
4V9C|1|BA|A|547
4V9C|1|BA|G|548
4V9C|1|BA|G|549
4V9C|1|BA|C|550

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BJ

50S ribosomal protein L13

Chain BQ

50S ribosomal protein L20

Chain BR

50S ribosomal protein L21