HL_4V9C_174

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

4V9C|1|DA|A|1453, 4V9C|1|DA|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9C_174 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.2311

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V9C|1|DA|C|1451
4V9C|1|DA|G|1452
4V9C|1|DA|A|1453
4V9C|1|DA|C|1454
4V9C|1|DA|G|1455
4V9C|1|DA|G|1456
4V9C|1|DA|U|1457
4V9C|1|DA|U|1458
4V9C|1|DA|G|1459

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DN

50S ribosomal protein L17