HL_4V9C_201

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9C_201 not in the Motif Atlas

Homologous match to HL_5J7L_196

Geometric discrepancy: 0.0863

The information below is about HL_5J7L_196

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V9C|1|DA|C|2594
4V9C|1|DA|G|2595
4V9C|1|DA|U|2596
4V9C|1|DA|G|2597
4V9C|1|DA|A|2598
4V9C|1|DA|G|2599

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CY

Ribosome recycling factor, RRF

Chain DC

50S ribosomal protein L2