HL_4V9H_052

3D structure

PDB id

4V9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state

Experimental method

X-RAY DIFFRACTION

Resolution

2.86 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

4V9H|1|BA|C|574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9H_052 not in the Motif Atlas

Homologous match to HL_7RQB_018

Geometric discrepancy: 0.0469

The information below is about HL_7RQB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

4V9H|1|BA|U|566
4V9H|1|BA|A|567
4V9H|1|BA|U|568
4V9H|1|BA|U|569
4V9H|1|BA|G|570
4V9H|1|BA|A|571
4V9H|1|BA|A|572
4V9H|1|BA|G|573
4V9H|1|BA|C|574
4V9H|1|BA|A|575

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L32

Chain BE

50S ribosomal protein L3

Chain BP

50S ribosomal protein L15

Chain BV

50S ribosomal protein L21