HL_4V9I_034
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V9I_034 not in the Motif Atlas
- Homologous match to HL_4WT8_217
- Geometric discrepancy: 0.0868
- The information below is about HL_4WT8_217
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
4V9I|1|AV|G|54
4V9I|1|AV|U|55
4V9I|1|AV|U|56
4V9I|1|AV|C|57
4V9I|1|AV|A|58
4V9I|1|AV|A|59
4V9I|1|AV|A|60
4V9I|1|AV|U|61
4V9I|1|AV|C|62
Current chains
- Chain AV
- P-SITE tRNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BG
- 50S ribosomal protein L5
- Chain BQ
- 50S ribosomal protein L16
Coloring options: