HL_4V9I_035

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

4V9I|1|AW|C|17, 4V9I|1|AW|G|18, 4V9I|1|AW|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_035 not in the Motif Atlas

Homologous match to HL_6GSL_208

Geometric discrepancy: 0.255

The information below is about HL_6GSL_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9I|1|AW|C|13
4V9I|1|AW|A|14
4V9I|1|AW|G|15
4V9I|1|AW|U|16
4V9I|1|AW|C|17
4V9I|1|AW|G|18
4V9I|1|AW|G|19
4V9I|1|AW|U|20
4V9I|1|AW|A|21
4V9I|1|AW|G|22

Current chains

Chain AW

E-SITE tRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BC

50S ribosomal protein L1