HL_4V9I_081

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAGAG

Length

6 nucleotides

Bulged bases

4V9I|1|BA|A|1680

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_081 not in the Motif Atlas

Homologous match to HL_7RQB_041

Geometric discrepancy: 0.1185

The information below is about HL_7RQB_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01057.2

Basepair signature

cWW

Number of instances in this motif group

5

Unit IDs

4V9I|1|BA|C|1676
4V9I|1|BA|A|1677
4V9I|1|BA|A|1678
4V9I|1|BA|G|1679
4V9I|1|BA|A|1680
4V9I|1|BA|G|1681

Current chains

Chain BA

23S ribosomal RNA

Nearby chains