HL_4V9I_088
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUAACUAUAAC
- Length
- 11 nucleotides
- Bulged bases
- 4V9I|1|BA|A|1934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V9I_088 not in the Motif Atlas
- Geometric match to HL_5TBW_049
- Geometric discrepancy: 0.1481
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V9I|1|BA|G|1931
4V9I|1|BA|U|1932
4V9I|1|BA|A|1933
4V9I|1|BA|A|1934
4V9I|1|BA|C|1935
4V9I|1|BA|U|1936
4V9I|1|BA|A|1937
4V9I|1|BA|U|1938
4V9I|1|BA|A|1939
4V9I|1|BA|A|1940
4V9I|1|BA|C|1941
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AM
- 30S Ribosomal protein S13
- Chain AV
- Transfer RNA; tRNA
- Chain AX
- mRNA
- Chain AY
- A-SITE tRNA
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