HL_4V9I_092

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

4V9I|1|BA|G|2226, 4V9I|1|BA|G|2227, 4V9I|1|BA|U|2229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_092 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.1801

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.4

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

4V9I|1|BA|C|2225
4V9I|1|BA|G|2226
4V9I|1|BA|G|2227
4V9I|1|BA|A|2228
4V9I|1|BA|U|2229
4V9I|1|BA|G|2230

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L28

Chain BD

50S ribosomal protein L2

Chain BI

50S ribosomal protein L9

Chain CD

30S Ribosomal protein S4