HL_4V9I_094

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4V9I|1|BA|A|2279, 4V9I|1|BA|C|2286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_094 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0626

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4V9I|1|BA|C|2275
4V9I|1|BA|U|2276
4V9I|1|BA|A|2277
4V9I|1|BA|A|2278
4V9I|1|BA|A|2279
4V9I|1|BA|A|2280
4V9I|1|BA|G|2281
4V9I|1|BA|G|2282
4V9I|1|BA|U|2283
4V9I|1|BA|A|2284
4V9I|1|BA|A|2285
4V9I|1|BA|C|2286
4V9I|1|BA|G|2287

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L27

Chain BQ

50S ribosomal protein L16