HL_4V9I_097

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCUGCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_097 not in the Motif Atlas

Homologous match to HL_7RQB_057

Geometric discrepancy: 0.0814

The information below is about HL_7RQB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

4V9I|1|BA|C|2366
4V9I|1|BA|C|2367
4V9I|1|BA|U|2368
4V9I|1|BA|G|2369
4V9I|1|BA|C|2370
4V9I|1|BA|A|2371
4V9I|1|BA|A|2372
4V9I|1|BA|G|2373

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L27

Chain B8

50S ribosomal protein L35

Chain BP

50S ribosomal protein L15