HL_4V9I_102

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_102 not in the Motif Atlas

Homologous match to HL_4WF9_058

Geometric discrepancy: 0.1418

The information below is about HL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V9I|1|BA|C|2562
4V9I|1|BA|U|2563
4V9I|1|BA|G|2564
4V9I|1|BA|U|2565
4V9I|1|BA|U|2566
4V9I|1|BA|C|2567
4V9I|1|BA|G|2568

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AY

A-SITE tRNA