HL_4V9I_125

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_125 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.0817

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V9I|1|CA|G|601
4V9I|1|CA|C|602
4V9I|1|CA|U|603
4V9I|1|CA|C|604
4V9I|1|CA|A|605
4V9I|1|CA|A|606
4V9I|1|CA|C|607

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CD

30S Ribosomal protein S4

Chain CP

30S Ribosomal protein S16