HL_4V9I_126

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_126 not in the Motif Atlas

Homologous match to HL_5J7L_015

Geometric discrepancy: 0.0754

The information below is about HL_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V9I|1|CA|C|673
4V9I|1|CA|G|674
4V9I|1|CA|G|675
4V9I|1|CA|U|676
4V9I|1|CA|G|677
4V9I|1|CA|A|678
4V9I|1|CA|A|679
4V9I|1|CA|A|680
4V9I|1|CA|U|681
4V9I|1|CA|G|682

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CG

30S Ribosomal protein S7

Chain CK

30S Ribosomal protein S11

Chain CW

Transfer RNA; tRNA

Chain DA

Large subunit ribosomal RNA; LSU rRNA