HL_4V9I_143

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

4V9I|1|CV|C|16, 4V9I|1|CV|G|19, 4V9I|1|CV|G|20, 4V9I|1|CV|U|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_143 not in the Motif Atlas

Homologous match to HL_4TUE_033

Geometric discrepancy: 0.1226

The information below is about HL_4TUE_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_93616.2

Basepair signature

cWW-cWS-F-F-F-F

Number of instances in this motif group

8

Unit IDs

4V9I|1|CV|C|13
4V9I|1|CV|A|14
4V9I|1|CV|G|15
4V9I|1|CV|C|16
4V9I|1|CV|C|17
4V9I|1|CV|U|18
4V9I|1|CV|G|19
4V9I|1|CV|G|20
4V9I|1|CV|U|21
4V9I|1|CV|A|22
4V9I|1|CV|G|23

Current chains

Chain CV

P-SITE tRNA

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DG

50S ribosomal protein L5