HL_4V9I_144
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V9I_144 not in the Motif Atlas
- Homologous match to HL_5E81_212
- Geometric discrepancy: 0.0675
- The information below is about HL_5E81_212
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
4V9I|1|CV|G|32
4V9I|1|CV|C|33
4V9I|1|CV|U|34
4V9I|1|CV|C|35
4V9I|1|CV|A|36
4V9I|1|CV|U|37
4V9I|1|CV|A|38
4V9I|1|CV|A|39
4V9I|1|CV|C|40
Current chains
- Chain CV
- P-SITE tRNA
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CI
- 30S Ribosomal protein S9
- Chain CM
- 30S Ribosomal protein S13
- Chain CW
- Transfer RNA; tRNA
- Chain CX
- mRNA
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