HL_4V9I_161

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

4V9I|1|DA|A|334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_161 not in the Motif Atlas

Homologous match to HL_7RQB_010

Geometric discrepancy: 0.0702

The information below is about HL_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

4V9I|1|DA|U|328
4V9I|1|DA|U|329
4V9I|1|DA|G|330
4V9I|1|DA|G|331
4V9I|1|DA|G|332
4V9I|1|DA|A|333
4V9I|1|DA|A|334
4V9I|1|DA|G|335

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DY

50S ribosomal protein L24