HL_4V9I_163

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

4V9I|1|DA|G|352, 4V9I|1|DA|A|353, 4V9I|1|DA|A|354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_163 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0938

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

4V9I|1|DA|G|350
4V9I|1|DA|U|351
4V9I|1|DA|G|352
4V9I|1|DA|A|353
4V9I|1|DA|A|354
4V9I|1|DA|A|355
4V9I|1|DA|G|356
4V9I|1|DA|C|357
4V9I|1|DA|C|358

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DF

50S ribosomal protein L4

Chain DY

50S ribosomal protein L24