HL_4V9I_176

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

4V9I|1|DA|U|873, 4V9I|1|DA|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_176 not in the Motif Atlas

Homologous match to HL_7RQB_025

Geometric discrepancy: 0.1138

The information below is about HL_7RQB_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

4V9I|1|DA|U|872
4V9I|1|DA|U|873
4V9I|1|DA|U|874
4V9I|1|DA|A|875
4V9I|1|DA|G|876
4V9I|1|DA|G|877

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DP

50S ribosomal protein L15