HL_4V9I_183

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_183 not in the Motif Atlas

Homologous match to HL_7RQB_033

Geometric discrepancy: 0.0711

The information below is about HL_7RQB_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

4V9I|1|DA|G|1326
4V9I|1|DA|U|1327
4V9I|1|DA|G|1328
4V9I|1|DA|A|1329
4V9I|1|DA|G|1330
4V9I|1|DA|A|1331
4V9I|1|DA|A|1332
4V9I|1|DA|U|1333
4V9I|1|DA|C|1334

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DR

50S ribosomal protein L17

Chain DW

50S ribosomal protein L22