HL_4V9I_201

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4V9I|1|DA|A|2051, 4V9I|1|DA|A|2052, 4V9I|1|DA|G|2053

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_201 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.074

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

4V9I|1|DA|G|2048
4V9I|1|DA|U|2049
4V9I|1|DA|G|2050
4V9I|1|DA|A|2051
4V9I|1|DA|A|2052
4V9I|1|DA|G|2053
4V9I|1|DA|A|2054
4V9I|1|DA|U|2055
4V9I|1|DA|G|2056
4V9I|1|DA|C|2057

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D5

50S ribosomal protein L32

Chain DE

50S ribosomal protein L3

Chain DV

50S ribosomal protein L21