HL_4V9I_211

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_211 not in the Motif Atlas

Homologous match to HL_7A0S_059

Geometric discrepancy: 0.3015

The information below is about HL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V9I|1|DA|C|2482
4V9I|1|DA|G|2483
4V9I|1|DA|U|2484
4V9I|1|DA|C|2485
4V9I|1|DA|C|2486
4V9I|1|DA|A|2487
4V9I|1|DA|C|2488
4V9I|1|DA|A|2489
4V9I|1|DA|G|2490

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CY

A-SITE tRNA

Chain D9

50S ribosomal protein L36

Chain DQ

50S ribosomal protein L16