HL_4V9I_212

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

4V9I|1|DA|G|2540

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_212 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.1134

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

4V9I|1|DA|U|2539
4V9I|1|DA|G|2540
4V9I|1|DA|A|2541
4V9I|1|DA|A|2542
4V9I|1|DA|G|2543
4V9I|1|DA|A|2544
4V9I|1|DA|A|2545
4V9I|1|DA|G|2546

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D9

50S ribosomal protein L36

Chain DH

50S ribosomal protein L6