HL_4V9I_224

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGAAACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9I_224 not in the Motif Atlas

Homologous match to HL_6CZR_215

Geometric discrepancy: 0.1955

The information below is about HL_6CZR_215

Detailed Annotation

GNRA with near cWW

Broad Annotation

GNRA with near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

4V9I|1|AA|G|157
4V9I|1|AA|G|158
4V9I|1|AA|G|159
4V9I|1|AA|A|160
4V9I|1|AA|A|161
4V9I|1|AA|A|162
4V9I|1|AA|C|163
4V9I|1|AA|U|164

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S Ribosomal protein S20