HL_4V9I_235
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UCAGUCGGUAGA
- Length
- 12 nucleotides
- Bulged bases
- 4V9I|1|CW|U|16, 4V9I|1|CW|C|17, 4V9I|1|CW|G|18, 4V9I|1|CW|G|19, 4V9I|1|CW|U|20, 4V9I|1|CW|A|21
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V9I_235 not in the Motif Atlas
- Homologous match to HL_4WT8_234
- Geometric discrepancy: 0.1089
- The information below is about HL_4WT8_234
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_96927.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
4V9I|1|CW|U|12
4V9I|1|CW|C|13
4V9I|1|CW|A|14
4V9I|1|CW|G|15
4V9I|1|CW|U|16
4V9I|1|CW|C|17
4V9I|1|CW|G|18
4V9I|1|CW|G|19
4V9I|1|CW|U|20
4V9I|1|CW|A|21
4V9I|1|CW|G|22
4V9I|1|CW|A|23
Current chains
- Chain CW
- E-SITE tRNA
Nearby chains
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: