HL_4V9L_054

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGUUGAG

Length

7 nucleotides

Bulged bases

4V9L|1|BA|G|615, 4V9L|1|BA|A|616

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V9L_054 not in the Motif Atlas

Homologous match to HL_7RQB_019

Geometric discrepancy: 0.1816

The information below is about HL_7RQB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32369.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

6

Unit IDs

4V9L|1|BA|C|611
4V9L|1|BA|G|612
4V9L|1|BA|U|613
4V9L|1|BA|U|614
4V9L|1|BA|G|615
4V9L|1|BA|A|616
4V9L|1|BA|G|617

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4